Vandeveld also was having difficulty obtaining authorization to release documents in his possession to the defense.
On Aug. 5, he e-mailed Father John Dear, a well-known Jesuit peace activist. Dear, who boasts of being arrested 75 times in protests, encouraged him to act, saying he might "save lives and change the direction of the entire policy."
With Frakt pressing for the charges against Jawad to be dismissed due to "outrageous government misconduct," Vandeveld proposed a plea agreement under which Jawad, now thought to be 22, could return to Afghanistan for rehabilitation. But his superiors rejected it, Vandeveld said.
By late August, he had told Frakt that there were other "disquieting" things about Guantanamo and that his superiors were refusing to address them or to let him quietly transfer out, Frakt said in an interview.
"Now might be a good time to take a courageous stand and expose some of the 'disquieting' things that you have alluded to, whatever they may be," Frakt replied in a Sept. 2 e-mail, noting that there would soon be a change of administrations in Washington.
"It wouldn't be a bad idea to distance yourself from a process that has become largely discredited, or at least distinguish yourself as one of the good guys, an ethical prosecutor trying to do the right thing," Frakt wrote.
On Sept. 9, Vandeveld e-mailed Dear to say he had resigned from the Guantanamo military tribunals: "The reaction was the expected outrage and condemnation. I have and will maintain my equanimity and, while scared for me and for my family, know that Christ will watch over me."
That, however, was only the beginning. In late September -- after the military, according to Frakt, initially tried to block it -- Vandeveld testified by video link for the defense, saying he believed that insurmountable problems with the tribunals might make them incapable of meting out justice fairly.
Morris said that Vandeveld is not qualified to speak about systemwide problems at Guantanamo. But Frakt said that he is and that Vandeveld's testimony and declaration only scratched the surface of his concerns, judging by their extensive conversations and hundreds of e-mail exchanges.
"There is a lot more that he knows," Frakt said.
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josh.meyer@latimes.com